• Halamphora coffeiformis
References [ 5 ]
Sato S, Tamotsu N & Mann DG (2013) Morphology and life history of Amphora commutata (Bacillariophyta) I: The vegetative cell and phylogenetic position. Phycologia 52: 225-238.
Réveillon D, Séchet V, Hess P & Amzil Z (2015) Systematic detection of BMAA (β-N-methylamino-L-alanine) and DAB (2,4-diaminobutyric acid) in mollusks collected in shellfish production areas along the French coasts. Toxicon 110: 35-46.
O'Neill P, Barrett A, Sullivan T, Regan F & Brabazon D (2016) Rapid prototyped biomimetic antifouling surfaces for marine applications. Materials Today: Proceedings 3: 527-532.
Hughes AH, Magot F, Tawfike A, Rad-Menéndez C, Thomas N, Young LC, Stucchi L, Carettoni D, Stanley MS, Edrada-Ebel R & Duncan KR (2021) Exploring the chemical space of macro- and micro- algae using comparative metabolomics Microorganisms 9: 311.
Hughes AH, Magot F, Tawfike AF, Rad Menéndez C, Thomas N, Young LC, Stucchi L, Carettoni D, Stanley MS, Edrada-EBel R & Duncan KR (2021) Exploring the chemical space of macro- and micro-algae using comparative metabolomics. Microorganisms 9: 311.
Sequences [ 1 ]
EMBL/Genbank Links
(Bold text = submission by CCAP staff or collaborators)
18S
Division/Phylum: Heterokontophyta/Ochrophyta Class: Bacillariophyceae Order: Naviculales

Note: for strains where we have DNA barcodes we can be reasonably confident of identity, however for those not yet sequenced we rely on morphology and the original identification, usually made by the depositor. Although CCAP makes every effort to ensure the correct taxonomic identity of strains, we cannot guarantee that a strain is correctly identified at the species, genus or class levels. On this basis users are responsible for confirming the identity of the strain(s) they receive from us on arrival before starting experiments.
For strain taxonomy we generally use AlgaeBase for algae and Adl et al. (2019) for protists.

Culture media, purity and growth conditions:
Medium: f/2 + Si; Bacteria present; maintained by serial subculture;
Attributes
Authority(C.Agardh) Mereschkowsky 1903
IsolatorLewin (pre 1960)
Collection Sitetidal pool La Jolla, California, USA
Notes Renamed 2018 as per Algaebase; name corrected 2023 as per AlgaeBase (from coffeaeformis to coffeiformis)
Axenicity Status Bacteria present
Area North America
Country USA
Environment Brackish
GMO No
Group Diatom
Original Designation Isolate No. 56
Pathogen Not pathogenic: Hazard Class 1
Strain Maintenance Sheet SM_MarineDiatoms15_20.pdf
Toxin Producer Not Toxic / No Data
Type Culture No
Taxonomy WoRMS ID 624065
Other DesignationsSMBA 283
Synonyms Amphora coffeaeformis (Agardh) Kützing 1844 , Amphora coffeiformis , Halamphora coffeaeformis
Formerly Listed in CCAP asAmphora coffeaeformis,Halamphora coffeaeformis

CCAP 1001/2

Halamphora coffeiformis


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