References [ 5 ]
Beveridge CM, Parr ACS, Smith MJ, Kerr A, Cowling MJ & Hodgkiess T (1998) The effect of benzalkonium chloride concentrations on nine species of marine diatom. Environmental Pollution 103: 31-36.
DOI: none
Damsté JSS, Muyzer G, Abbas B, Rampen SW, Massé G, Allard WG, Belt ST, Robert JM, Rowland SJ, Moldowan JM, Barbanti SM, Fago FJ, Denisevich P, Dahl J, Trindade LA & Schouten S (2004) The rise of the rhizosolenid diatoms. Science 304 (5670): 584-587.
Rampen SW, Schouten S, Abbas B, Panoto FE, Muyzer G, Campbell CN, Fehling J & Sinninghe Damste JS (2007) On the origin of 24-norcholestanes and their use as age-diagnostic biomarkers Geology 35: 419-422.
Rampen SW, Schouten S, Panoto FE, Brink M, Andersen RA, Muyzer G, Abbas B & Sinninghe Damste JS (2009) Phylogenetic position of Attheya longicornis and Attheya septentrionalis (Bacillariophyta). Journal of Phycology 45: 444-453.
Samanta B & Bhadury P (2014) Analysis of diversity of chromophytic phytoplankton in a mangrove ecosystem using rbcL gene sequencing. Journal of Phycology 50: 328-340.
Sequences [ 3 ]
EMBL/Genbank Links
(Bold text = submission by CCAP staff or collaborators)
Genome-Plastid
Division/Phylum: Heterokontophyta/Ochrophyta Class: Bacillariophyceae Order: Naviculales

Note: for strains where we have DNA barcodes we can be reasonably confident of identity, however for those not yet sequenced we rely on morphology and the original identification, usually made by the depositor. Although CCAP makes every effort to ensure the correct taxonomic identity of strains, we cannot guarantee that a strain is correctly identified at the species, genus or class levels. On this basis users are responsible for confirming the identity of the strain(s) they receive from us on arrival before starting experiments.
For strain taxonomy we generally use AlgaeBase for algae and Adl et al. (2019) for protists.

Culture media, purity and growth conditions:
Medium: f/2 + Si; Bacteria present; maintained by serial subculture;
Attributes
Authority(C.Agardh) Mereschkowsky 1903
IsolatorLewin (pre 1960)
Collection Site Woods Hole, Massachusetts, USA
Notes Renamed 2018 as per Algaebase; name corrected 2023 as per AlgaeBase (from coffeaeformis to coffeiformis)
Axenicity Status Bacteria present
Area North America
Country USA
Environment Brackish
GMO No
Group Diatom
Original Designation Isolate No. 47
Pathogen Not pathogenic: Hazard Class 1
Strain Maintenance Sheet SM_MarineDiatoms15_20.pdf
Toxin Producer Not Toxic / No Data
Type Culture No
Taxonomy WoRMS ID 624065
Equivalent StrainsCCMP127,UTEX 2039
Other DesignationsSMBA 281
Synonyms Amphora coffeaeformis (Agardh) Kützing 1844 , Amphora coffeiformis , Halamphora coffeaeformis
Formerly Listed in CCAP asAmphora coffeaeformis,Halamphora coffeaeformis

CCAP 1001/1

Halamphora coffeiformis


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