Strain Information: 1310/4

Division/Phylum: Heterokontophyta/Ochrophyta    Class: Phaeophyceae    Order: Ectocarpales


Ectocarpus siliculosus (Dillwyn) Lyngbye (1819)

CCAP 1310/4
Isolator: Peters (2002)
Origin: Marine; San Juan, Peru
Culture: Medium Modified Provasoli - half strength; Bacteria present; sub; Opt temp 5-20 deg C
Other: Orig. desig. Esil32m; clonal male gametophyte contains Ectocarpus virus. Sequenced strain of Ectocarpus siliculosus: accession numbers from FN647682-FN649242 and FN649726-FN649760. The Ectocarpus siliculosus whole genome shotgun (WGS) project has the project accession CABU00000000. The current version of the project (01) has the accession number CABU01000000, and consists of sequences CABU01000001 - CABU01013533.;


References [28]   EMBL Links
Peters AF, Scornet D, Ratin M, Charrier B, Monnier A, Merrien Y, Corre E, Coelho SM & Cock JM (2008) Life-cycle-generation-specific developmental processes are modified in the immediate upright mutant of the brown alga Ectocarpus siliculosus. Development 135: 1503-1512.
DOI: 10.1242/dev.016303

Gachon CMM, Day JG, Campbell CN, Pröschold T, Saxon RJ & Küpper FC (2007) The Culture Collection of Algae and Protozoa (CCAP): A biological resource for protistan genomics Gene 406: 51-57.
DOI: 10.1016/j.gene.2007.05.018

Gachon CMM, Strittmatter M, Müller DG, Kleinteich J & Küpper FC (2009) Detection of differential host susceptibility to the marine oomycete pathogen Eurychasma dicksonii by real-time PCR: Not all algae are equal. Applied and Environmental Microbiology 75(2): 32-328.
DOI: 10.1128/AEM.01885-08

Le Bail A, Billoud B, Maisonneuve C, Peters AF, Cock JM & Charrier B (2008) Early development pattern of the brown alga Ectocarpus siliculosus (Ectocarpales, Phaeophyceae) sporophyte. Journal of Phycology 44: 1269-1281.
DOI: 10.1111/j.1529-8817.2008.00582.x

Peters AF, van Wijk SJ, Cho GY, Scornet D, Hanyuda T, Kawai H, Schroeder DC, Cock JM & Boo SM (2010) Reinstatement of Ectocarpus crouaniorum Thuret in Le Jolis as a third common species of Ectocarpus (Ectocarpales, Phaeophyceae) in Western Europe, and its phenology at Roscoff, Brittany. Phycological Research 58: 1-14.
DOI: 10.1111/j.1440-1835.2010.00574.x

Cock JM et al. (2010) The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature 465: 617-621.
DOI: 10.1038/nature09016

Dittami SM, Scornet D, Petit J-L, Ségurens B, Da Silva C, Corre E, Dondrup M, Glatting K-H, König R, Sterck L, Rouzé P, Van de Peer Y, Cock JM, Boyen C & Tonon T (2009) Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress. Genome Biology 10: 66.
DOI: 10.1186/gb-2009-10-6-r66

Le Bail A, Dittami SM, de Franco P-O, Rousvoal S, Cock MJ, Tonon T & Charrier B (2008) Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus. BMC Molecular Biology 9: 75.
DOI: 10.1186/1471-2199-9-75

Cock JM, Coelho SM, Brownlee C & Taylor AR (2010) The Ectocarpus genome sequence: insights into brown algal biology and the evolutionary diversity of the eukaryotes. New Phytologist 188: 1-4.
DOI: 10.1111/j.1469-8137.2010.03454.x

Peters AF, Mann AD, Córdova CA, Brodie J, Correa JA, Schroeder DC & Cock JM (2010) Genetic diversity of Ectocarpus (Ectocarpales, Phaeophyceae) in Peru and northern Chile, the area of origin of the genome-sequenced strain. New Phytologist 188: 30-41.
DOI: 10.1111/j.1469-8137.2010.03303.x

Heesch S, Cho GY, Peters AF, Le Corguillé G, Falentin C, Boutet G, Coëdel S, Jubin C, Samson G, Corre E, Coelho SM & Cock JM (2010) A sequence-tagged genetic map for the brown alga Ectocarpus siliculosus provides large-scale assembly of the genome sequence. New Phytologist 188: 42-51.
DOI: 10.1111/j.1469-8137.2010.03273.x

Gravot A, Dittami SM, Rousvoal S, Lugan R, Eggert A, Collén J, Boyen C, Bouchereau A & Tonon T (2010) Diurnal oscillations of metabolite abundances and gene analysis provide new insights into central metabolic processes of the brown alga Ectocarpus siliculosus. New Phytologist 188: 98/110.
DOI: 10.1111/j.1469-8137.2010.03400.x

Bothwell JH, Marie D, Peters AF, Cock JM & Coelho SM (2010) Role of endoreduplication and apomeiosis during parthenogenetic reproduction in the model brown alga Ectocarpus. New Phytologist 188: 111/121.
DOI: 10.1111/j.1469-8137.2010.033573.x

Dittami SM, Proux C, Rousvoal S, Peters AF, Cock JM, Coppée J-Y, Boyen C & Tonon T (2011) Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae) BMC Molecular Biology 12: 2.
DOI: none

Grenville-Briggs L, Gachon CMM, Strittmatter M, Sterck L & Kuepper FC (2011) A molecular insight into algal-oomycete warfare: cDNA analysis of Ectocarpus siliculosus infected with the basal oomycete Eurychasma dicksonii. PLoS ONE 6: -.
DOI: 10.1371/journal.pone.0024500

Dittami SM, Gravot A, Goulitquer S, Rousvoal S, Peters AF, Bouchereau A, Boyen C & Tonon T (2012) Towards deciphering dynamic changes and evolutionary mechanisms involved in the adaptation to low salinities in Ectocarpus (brown algae) The Plant Journal 71: 366-377.
DOI: 10.1111/j.1365-313X.2012.04982.x

Zambounis A, Strittmatter M & Gachon CMM (2013) Chronic stress and disease resistance in the genome model marine seaweed Ectocarpus siliculosus. Aquatic Botany 104: 147-152.
DOI: 10.1016/j.aquabot.2012.07.008

Tsirigoti A, Kupper FC, Gachon CMM & Katsaros C (2013) Cytoskeleton organization during the infection of three brown algal species Ectocarpus siliculosus, Ectocarpus crouaniorum and Pylaiella littoralis by the intracellular, marine oomycete Eurychasma dicksonii. Plant Biology 1: 272-281.
DOI: 10.1111/plb.12041

Coelho SM, Godfroy O, Arun A, Le Corguille G, Peters AF & Cock JM (2011) OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus. PNAS 108: 11518-11523.
DOI: 10.1073/pnas.1102274108

Greco M, Saez CA, Brown MT & Bitonti MB (2014) A simple and effective method for high quality co-extraction of genomic DNA and total RNA from low biomass Ectocarpus siliculosus, the model brown alga. PLoS ONE 9(5): e96470.
DOI: 10.1371/journal.pone.0096470

Strittmatter M, Grenville-Briggs LJ, Breithut L, van West P, Gachon CMM & Küpper FC (2015) Infection of the brown alga Ectocarpus siliculosus by the oomycete Eurychasma dicksonii induces oxidative stress and halogen metabolism. Plant, Cell and Environment -: -.
DOI: 10.1111/pce.12533

Miller EP, Böttger LH, Weerasinghe AJ, Crumbliss AL, Matzanke BF, Meyer-Klaucke W, Küpper FC & Carrano CJ (2014) Surface-bound iron: a metal ion buffer in the marine brown alga Ectocarpus siliculosus? Journal of Experimental Botany 65: 585-594.
DOI: 10.1093/jxb/ert406

Groisillier A, Shao Z, Michel G, Goulitquer S, Bonin P, Krahulec S, Nidetzky B, Duan D, Boyen C & Tonon T (2014) Mannitol metabolism in brown algae involves a new phosphatase family. Journal of Experimental Botany 65: 559-570.
DOI: 10.1093/jxb/ert405

Billoud B, Nehr Z, Le Bail A & Charrier B (2014) Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus. Nucleic Acids Research 42: 417-429.
DOI: 10.1093/nar/gkt856

Zambounis A, Gaquerel E, Strittmatter M, Salaün JP, Potin P & Küpper FC (2012) Prostaglandin A2 triggers a strong oxidative burst in Laminaria: a novel defense inducer in brown algae? Algae 27: 21-32.
DOI: 10.4490/algae.2012.27.1.021

Tsirigoti A, Küpper FC, Gachon CMM & Katsaros C (2013) Filamentous brown algae infected by the marine, holocarpic oomycete Eurychasma dicksonii. Plant Signaling & Behavior 8: e26367.
DOI: 10.4161/psb.26367

Terauchi M, Nagasato C, Inoue A, Ito T & Motomura T (2016) Distribution of alginate and cellulose and regulatory role of calcium in the cell wall of the brown alga Ectocarpus siliculosus (Ectocarpales, Phaeophyceae) Planta -: -.
DOI: 10.1007/s00425-016-2516-4

Meslet-Cladière L, Delage L, Leroux CJJ, Goulitquer S, Leblanc C, Creis E, Ar Gall E, Stiger-Pouvreau V, Czjzek M & Potin P (2013) Structure/function analysis of a type III polyketide synthase in the brown alga Ectocarpus siliculosus reveals a biochemical pathway in phlorotannin monomer biosynthesis. The Plant Cell 25: 3089-3103.
DOI: 10.1105/tpc.113.111336

CABU00000000 (Whole Genome Shotgun)

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Catalogue updated: 2 September 2016