Strain Information: 1055/1


Division/Phylum: Heterokontophyta    Class: Bacillariophyceae

 

Phaeodactylum tricornutum Bohlin (1897)

CCAP 1055/1
Isolator: De Martino & Ten-Hage (2003)
Origin: Marine; Blackpool, England,
Culture: Medium f/2 + Si; Bacteria present; sub + cryo
Other: Clone 8.6 isolated from CCMP 632. 12000 expressed sequence tags (ESTs) have been analysed from the genome of this clone and have been organised in a queryable database. Deposited by Bowler & De Martino.;

 

References [33]   EMBL Links
     
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DOI: 10.1007/s00438-006-0199-4

Bowler C et al. (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature (Letters) 456: -.
DOI: 10.1038/nature07410

Gachon CMM, Day JG, Campbell CN, Pröschold T, Saxon RJ & Küpper FC (2007) The Culture Collection of Algae and Protozoa (CCAP): A biological resource for protistan genomics Gene 406: 51-57.
DOI: 10.1016/j.gene.2007.05.018

De Martino A, Meichenin A, Shi J, Pan K & Bowler C (2007) Genetic and phenotypic characterization of Phaeodactylum tricornutum (Bacillariophyceae) accessions. Journal of Phycology 43: 992-1009.
DOI: 10.1111/j.1529-8817.2007.00384.x

Huysman MJJ, Martens C, Vandepoele K, Gillard J, Rayko E, Heijde M, Bowler C, Inzé D, Van de Peer Y, De Veylder L & Vyverman W (2010) Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling. Genome Biology 11: R17.
DOI: 10.1186/gb-2010-11-2-r17

Montsant A, Maheswari U, Bowler C & Lopez PJ (2005) Diatomics: Toward diatom functional genomics. Journal of Nanoscience and Nanotechnology 5: 1-11.
DOI: 10.1166/jnn.2005.003

Toda H & Itoh N (2011) Isolation and characterization of a gene encoding a S-adenosyl-L-methionine-dependent halide/thiol methyltransferase (HTMT) from the marine diatom Phaeodactylum tricornutum: Biogenic mechanism of CH3I emissions in oceans. Phytochemistry 72: 337-343.
DOI: 10.1016/j.phytochem.2010.12.003

De Martino A, Bartual A, Willis A, Meichenin A, Villazán B, Maheswari U & Bowler C (2011) Physiological and molecular evidence that environmental changes elicit morphological interconversion in the model diatom Phaeodactylum tricornutum. Protist 162: 462-481.
DOI: 10.1016/j.protis.2011.02.00

Yang EC, Boo GH, Kim HJ, Cho SM, Boo SM, Andersen RA & Yoon HS (2012) Supermatrix data highlight the phylogenetic relationships of photosynthetic stramenopiles. Protist 163: 217-231.
DOI: 10.1016/j.protis.2011.08.001

Shlykov MA, Zheng WH, Chen JS & Saier MH (2012) Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins. Biochimica & Biophysica Acta 1818: 703-717.
DOI: 10.1016/j.bbamem.2011.12.005

Lei QY & Lu SH (2011) Molecular ecological responses of the dinoflagellate Karenia mikimotoi to phosphate stress. Harmful Algae 12: 39-45.
DOI: 10.1016/j.hal.2011.08.010

Momand J, Villegas A & Belyi VA (2011) The evolution of MDM2 family genes. Gene 486: 23-30.
DOI: 10.1016/j.gene.2011.06.030

Yu ET, Zendejas FJ, Lane PD, Gaucher S, Simmons BA & Lane TW (2009) Triacylglycerol accumulation and profiling in the model diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum (Baccilariophyceae) during starvation Journal of Applied Phycology 21: 669-681.
DOI: 10.1007/s10811-008-9400-y

Lommer M, Specht M, Roy A, Kraemer L, Andreson R, Gutowska MA, Wolf J, Bergner SV, Schilhabel MB, Klostermeier UC, Beiko RG, Rosenstiel P, Hippler M & LaRoche J (2012) Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation. Genome Biology 13: R66.
DOI: 10.1186/gb-2012-13-7-r66

Lopez Barreiro D, Zamalloa C, Boon N, Vyverman W, Ronsse F, Brilman W & Prins W (2013) Influence of strain-specific parameters on hydrothermal liquefaction of microalgae Bioresource Technology 146: 463-471.
DOI: 10.1016/j.biortech.2013.07.123

Lavaud J & Lepetit B (2013) An explanation for the inter-species variability of the photoprotective non-photochemical chlorophyll fluorescence quenching in diatoms. Biochimica & Biophysica Acta 1827: 294-302.
DOI: 10.1016/j.bbabio.2012.11.012

Oncel SS (2013) Microalgae for a macroenergy world. Renewable and Sustainable Energy Reviews 26: 241-264.
DOI: 10.1016/j.rser.2013.05.059

Johnson EA & Lecomte JTJ (2013) Chapter Six - The globins of cyanobacteria and algae. Advances in Microbial Physiology 63: 195-272.
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Vlachakis D, Pavlopoulou A, Kazazi D & Kossida S (2013) Unraveling microalgal molecular interactions using evolutionary and structural bioinformatics. Gene 528: 109-119.
DOI: 10.1016/j.gene.2013.07.039

Gangaplara A, Massilamany C, Steffen D & Reddy J (2013) Mimicry epitope from Ehrlichia canis for interphotoreceptor retinoid-binding protein 201-216 prevents autoimmune uveoretinitis by acting as altered peptide ligand. Journal of Neuroimmunology 263: 98-107.
DOI: 10.1016/j.jneuroim.2013.08.006

Seligmann H (2013) Systematic asymmetric nucleotide exchanges produce human mitochondrial RNAs cryptically encoding for overlapping protein coding genes. Journal of Theoretical Biology 324: 1-20.
DOI: 10.1016/j.jtbi.2013.01.024

Lee MA, Faria DG, Han MS, Lee J & Ki JS (2013) Evaluation of nuclear ribosomal RNA and chloroplast gene markers for the DNA taxonomy of centric diatoms. Biochemical Systematics and Ecology 50: 163-174.
DOI: 10.1016/j.bse.2013.03.025

Perez-Lopez P, Gonzalez-Garcia S, Allewaert C, Verween A, Murray P, Feijoo G & Moreira MT (2014) Environmental evaluation of eicosapentaenoic acid production by Phaeodactylum tricornutum. Science of the Total Environment 466-467: 991-1002.
DOI: 10.1016/j.scitotenv.2013.07.105

Formighieri C, Cazzaniga S, Kuras R & Bassi R (2013) Biogenesis of photosynthetic complexes in the chloroplast of Chlamydomonas reinhardtii requires ARSA1, a homolog of prokaryotic arsenite transporter and eukaryotic TRC40 for guided entry of tail-anchored proteins. The Plant Journal 73: 850-861.
DOI: 10.1111/tpj.12077

Zhuang Y, Zhang H & Lin S (2013) Polyadenylation of 18S rRNA in algae Journal of Phycology 49: 570-579.
DOI: 10.1111/jpy.12068

Rahman MM, Rahman MA, Maki T, Nishiuchi T, Asano T & Hasegawa H (2014) A marine phytoplankton (Prymnesium parvum) up-regulates ABC transporters and several other proteins to acclimatize with Fe-limitation. Chemosphere 95: 213-219.
DOI: 10.1016/j.chemosphere.2013.09.001

Zhang C, Lin S, Huang L, Lu W, Li M & Liu S (2014) Suppression subtraction hybridization analysis revealed regulation of some cell cycle and toxin genes in Alexandrium catenella by phosphate limitation. Harmful Algae 39: 26-39.
DOI: 10.1016/j.hal.2014.06.005

Fabris M, Matthijs M, Carbonelle S, Moses T, Pollier J, Dasseville R, Baart GJE, Wyverman W & Goossens A (2014) Tracking the sterol biosynthesis pathway of the diatom Phaeodactylum tricornutum. New Phytologist -: -.
DOI: 10.1111/nph.12917

Cuvelier ML, Allen AE, Monier A, McCrow JP, Messie M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, DuPont CL, Latasa M, Guigand C, Buck KR, Hilton J, Thiagarajan M, Caler E, Read B, Lasken RS, Chavez FP & Worden AZ (2010) Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. PNAS 107: 14679-14684.
DOI: 10.1073/pnas.1001665107

He L, Han X & Yu Z (2014) A rare Phaeodactylum tricornutum cruciform morphotype: Culture conditions, transformation and unique fatty acid characteristics. PLoS ONE 9: e93922.
DOI: 10.1371/journal.pone.0093922

Nakayama T, Ishida KI & Archibald JM (2012) Broad distribution of TPI-GAPDH fusion proteins among eukaryotes: Evidence for glycolytic reactions in the mitochondrion? PLoS ONE 7(12): e52340.
DOI: 10.1371/journal.pone.0052340

Qian D, Jiang L, Lu L, Wei C & Li Y (2011) Biochemical and structural properties of cyanases from Arabidopsis thaliana and Oryza sativa. PLoS ONE 6(3): e18300.
DOI: 10.1371/journal.pone.0018300

Tsaousis AD, Gentekaki E, Eme L, Gaston D & Roger AJ (2014) Evolution of the cytosolic iron-sulfur cluster assembly machinery in Blastocystis species and other microbial eukaryotes. Eukaryotic Cell 13: 143-153.
DOI: 10.1128/EC.00158-13

DQ085801 ()
DQ287774 ()
EF067920 (Genome-Plastid)
BN001459 (nat1)

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Catalogue updated: 16 December 2014