CCAP/SAMS author name is underlined. For Meeting papers; Oral papers (O) and Poster papers (P).

ISI CITED PEER REVIEWED PUBLICATIONS in the 2005-2010 period

Amato A, Kooistra WHCF, Ghiron JHL, Mann DG, Pröschold T & Montresor M (2007) Reproductive isolation among sympatric cryptic species in marine diatoms. Protist 158(2), 193-207.

Amin SA, Green DH, Hart MC, Küpper FC, Sunda WG & Carrano CJ (2009) Photolysis of iron-siderophore chelates promotes bacterial-algal mutualism. Proceedings of the National Academy of Sciences of the USA 106(40), 17071-6.

Amin SA, Green DH, Küpper FC & Carrano CJ (2009) Vibrioferrin, an unusual marine siderophore: Iron binding, photochemistry and biological implications. Inorganic Chemistry 48, 11451-8.

Amin SA, Küpper FC, Green DH, Harris W & Carrano CJ (2007) Boron binding by a siderophore isolated from marine bacteria associated with the toxic dinoflagellate G. catenatum. Journal of the American Chemical Society. 129, 478-479.

Carrano CJ, Schellenberg S, Amin SA, Green DH & Küpper FC (2009) Boron and marine life: A new look at an enigmatic bioelement. Marine Biotechnology 11: 431-440.

Chance R, Baker AR, Küpper FC, Hughes C, Kloareg B & Malin G (2009) The release and transformations of inorganic iodine by marine macroalgae. Estuarine, Coastal and Shelf Science 82: 406-414.

Day JG, Benson EE, Harding K, Knowles B, Idowu M, Bremner D, Santos L, Santos F, Friedl T, Lorenz M, Lukesova A, Elster J, Lukavsky J, Herdman M, Rippka R & Hall T (2005) Cryopreservation and conservation of microalgae: the development of a pan-european scientific and biotechnological resource (the COBRA project). CryoLetters 26, 231-238.

Day JG, Lorenz M, Wilding TA, Friedl T, Harding K, Pröschold T, Brennan D, Müller J, Santos L, Santos F, Osorio U, Amaral R, Elster J, Lukavský J, Lukesova A, Hrouzek P, Lukes M, Probert I, Ryan M & Benson EE (2007) The use of physical and virtual infrastructures for the validation of algal cryopreservation methods in international culture collections. Cryoletters 28(5), 359-376.

Feiters MC, Küpper FC & Meyer-Klaucke W (2005) X-ray absorption spectroscopic studies on model compounds for biological iodine and bromine. Journal of Synchrotron Radiation 12, 85-93.

Feiters MC, Leblanc C, Küpper FC, Meyer-Klaucke W, Michel G & Potin P (2005)  Bromine is an endegenous component of a vanadium bromoperoxidase.  Journal of the American Chemical Society 127, 15340-15341

Feiters MC, Meyer-Klaucke W, Kostenko AV, Soldatov AV, Leblanc C, Michel G, Potin P, Küpper FC, Hollenstein K, Locher KP, Bevers LE, Hagedoorn P-L & Hagen WR (2009) Anion binding in biological systems. Journal of Physics: Conference Series 190, 012196

Fleck RA, Pickup RW, Day JG & Benson EE (2006) The use of flow-cytometry and cryomicroscopy to characterise cryopreservation-induced injuries in Euglena gracilis. Cryobiology 52: 261-268.

Folmer F, Jaspars M, Solano G, Cristofanon S, Henry E, Tabudravu J, Black K, Green DH, Küpper FC, Aalbersberg W, Feussner K, Dicato M & Diederich M (2009) The inhibition of TNF-a induced NF-kB activation by marine natural products. Biochemical Pharmacology 78: 592-606.

Gachon CMM, Day JG, Campbell CN, Pröschold T, Saxon RJ & Küpper FC (2007) The Culture Collection of Algae and Protozoa (CCAP): A biological resource for protistan genomics. Gene 406: 51-57 .

Gachon CMM, Küpper H, Küpper FC & Setlík I (2006) Witnessing effects of a pathogen on photosynthesis of its host at the cellular level: chlorophyll fluorescense kinetic microscopy of Pylaiella littoralis (Phaeophyceae) infected by Chytridium polysiphoniae (Chytridiomycota). European Journal of Phycology 41(4): 395-403.

Gachon CMM, Strittmatter M, Müller DG, Kleinteich J & Küpper FC (2009) Differential host susceptibility to the marine oomycete pathogen Eurychasma dicksonii detected by real time PCR: Not all algae are equal.  Applied and Environmental Microbiology 75(2): 322-328.

Gerloff-Elias A, Spijkerman E & Pröschold T (2005)  Effect of external pH on the growth, photosynthesis and photosynthetic electron transport of Chlamydomonas acidophila Negoro, isolated from an extremely acidic lake (pH 2.6).  Plant Cell Environ. 28, 1218-1229.

Harris W, Amin SA, Küpper FC, Green DH & Carrano CJ (2007) Borate-binding to siderophores: structure and stability. Journal of the American Chemical Society 129, 12263-12271.

Hédoin H, Pearson J, Day JG, Philip D, Young AJ & Hall TJ (2006) Porphyridium cruentum A-408 and Planktothrix A-404 retain their capacity to produce biotechnologically exploitable metabolites after cryopreservation.  J. Appl. Phycol. 18: 1-7.

Hoppenrath M, Bolch CJS, Yoshimatsu S, Saldarriaga JF, Schweikert M, Campbell CN, Toriumi S, Dodge JD, Elbrächter M & Taylor FJR (2005) Nomenclatural note on a Thecodinium species (Dinophyceae, Gonyaulacales), which was described as new independently three times within two months. J. Phycol. 41, 1284-1286.

Johnstone C, Benson EE, Day JG & Staines H (2006) The development of a 2,2'-azinobis-(3-ethyl-benzothiazoline-6-sulfonic acid) radical cation decolourisation assay for evaluating total antioxidant status in an alga used to monitor environmental impacts in urban aquatic habitats. Ecological Indicators 6: 770-779 .

Johnstone C, Day JG, Staines H & Benson EE (2006) An in vitro oxidative stress test for determining pollutant tolerance in algae.  Eclogical Indicators 6: 280-289 .

Küpper FC, Carpenter LJ, McFiggans GB, Palmer CJ, Waite TJ, Boneberg E, Woitsch S, WeillerM, Abela R, Grolimund D, Potin P, Butler A, Luther GW, Kroneck PMH, Meyer-Klaucke W & Feiters MC (2008) Iodide accumulation provides kelp with an inorganic antioxidant impacting atmospheric chemistry. Proceedings of the National Academy of Sciences of the United States of America 105: 6954-6958.

Küpper FC, Carrano CJ, Kuhn JU & Butler A (2006) Photoreactivity of iron(III)-aerobactin: photoproduct structure, iron(III) coordination, and iron(III) uptake by marine Vibrio sp. DS40M5. Inorganic Chemistry 45(15): 6028-6033.

Küpper FC, Gaquerel E, Boneberg E-M, Morath S, Salaün J-P & Potin P (2006) Early events in the perception of lipopolysaccharides in the brown alga Laminaria digitata include an oxidative burst and activation of fatty acid oxidation cascades. Journal of Experimental Botany 57: 1991-1999.

Küpper FC, Gaquerel E, Cosse A, Adas F, Peters AF, Müller DG, Kloareg B, Salaün J-P & Potin P (2009) Free fatty acids and methyl jasmonate trigger defence reactions in Laminaria digitata. Plant and Cell Physiology 50(4): 789-800.

Küpper FC, Maier I, Müller DG, Loiseaux-de Goër S & Guillou L (2006) Phylogenetic affinities of two eukaryotic pathogens of marine macroalgae, Eurychasma dicksonii and Chytridium polysiphoniae.  Cryptogamie - Algologie 27: 165-184 .

Küpper H, Mijovilovich A, Götz B, Kroneck PMH, Küpper FC & Meyer-Klaucke W (2009) Complexation and toxicity of copper in higher plants (I): Characterisation of copper accumulation, speciation and toxicity in Crassula helmsii as a new copper hyperaccumulator. Plant Physiology 151: 702-14.

Love GD, Bowden SA, Summons RE, Jahnke LL, Snape CE, Campbell CN & Day JG (2005) An optimised catalytic hydropyrolysis method for the rapid screening of microbial cultures for lipid biomarkers. Organic Geochemistry 36, 63-82.

Müller J, Day JG, Harding K, Hepperle D, Lorenz M & Friedl T (2007) Assessing genetic stability of a range of terrestrial microalgae after cryopreservation using amplified fragment length polymorphism (AFLP). American Journal of Botany. 94, 799-808.

Müller D, Krick A, Kehraus S, Hart M, Küpper FC, Prinz H, Janning P, Waldmann H, Schwalbe H, Saxena K & König GM (2006) Brunsvicamide A-C, sponge-related cyanobacterial peptides with Mycobacterium tuberculosis protein tyrosine phosphatase inhibitory activity. Journal of Medicinal Chemistry 49(16): 4871-4878.

Müller J, Friedl T, Hepperle D, Lorenz M & Day JG (2005) Distinction of isolates among multiple strains of Chlorella vulgaris (Chlorophyta, Trebouxiophyceae) and Testing Conspecificity with Amplified Fragment Length Polymorphism and ITS RDNA sequences.  J. Phycol. 41, 1236-1247.

Müller DG, Gachon CMM & Küpper FC (2008) Axenic clonal cultures of filamentous brown algae: initiation and maintenance. Cahiers de Biologie Marine 49: 59-65.

Palmer CJ, Anders TL, Carpenter LJ, Küpper FC & McFiggans GB (2005)  Iodine and halocarbon response of Laminaria to oxidative stress and links to atmospheric new particle production.  Environmental Chemistry 2: 282-290 .

Parys S, Kehraus S, Pete R, Küpper FC, Glombitza K-W & König GM (2009) Seasonal variation of polyphenolics in Ascopyllum nodosum (L.) Le Jol (Phaeophyceae). European Journal of Phycology 44(3): 331-338.

Pröschold T, Harris, EH & Coleman AW (2005) Portrait of a species: Chlamydomonas reinhardtii. Genetics 170, 1601-1610.

Rampen SW, Schouten S, Abbas B, Panoto FE, Muyzer G, Campbell CN, Fehling J & Sinninghe Damsté JS (2007) On the origin of 24-norcholestanes and their use as age-diagnostic biomarkers.  Geology 35(5): 419-422.

Ross C, Küpper FC, Vreeland V, Waite JH & Jacobs RS (2005)  Evidence of a latent oxidative burst in relation to wound repair in the giant unicellular chlorophyte Dasycladus vermicularis.  Journal of Phycology 41, 531-41.

Ross C, Küpper FC & Jacobs RS (2006) Involvement of reactive oxygen species and relative nitrogen species in the wound response in Dasycladus vermicularis (Chlorophyta). Chemistry & Biology 13: 353-364.

Sekimoto S, Beakes GW, Gachon CMM, Müller DG, Küpper FC & Honda D (2008) The development, ultrastructural cytology and molecular phylogeny of the basal oomycete Eurychasma dicksonii, infecting the filamentous phaeophyte algae Ectocarpus siliculosus and Pylaiella littoralis. Protist 159, 299-318.

Welling M, Pohnert G, Küpper FC & Ross C (2009) Rapid biopolymerisation during wound plug formation in green algae. Journal of Adhesion 85: 825-838.

Zhang G, Amin SA, Küpper FC, Holt PD, Carrano CJ & Butler A (2009) Ferric stability constants of representative marine siderophores: Marinobactins, aquachelins, and petrobactin. Inorganic Chemistry 48, 11466-73.

OTHER PEER REVIEWED PUBLICATIONS

Benson EE, Harding K & Day JG (in press) Algae at extreme low temperatures: the cryobank. In: Extremophilic-Enigmatic Algae and Cyanobacteria. Seckbach J (Ed) Springer, The Netherlands.

Day JG & Harding K (in press) Cryopreservation Protocols for Workign Laboratories: Low plants: Algae. In: Plant Cryopreservation: A Practical Guide. Reed BM (Ed) Springer.

Day JG, Achilles-Day U, Brown S & Warren A (in press) Cultivation of algae and protozoa. In: Manual of Environmental Microbiology. Hurst GR, McInerney MJ, Stezenbach LD & Walter MV (Eds) ASM Press, Washington DC.

Heinrichs J, Groth H, Lindner M, Renker C, Pocs T & Pröschold T (in press) Intercontinental distribution of Plagiochila corrugata (Plagiochilaceae, Hepaticae) inferred from nr DNA ITS sequences and morphology. Bot. J. Linn. Soc.

BOOK CHAPTERS

Benson EE, Harding K & Day JG (2007) Algae at extreme low temperatures: the cryobank. In: Algae and Cyanobacteria in Extreme Environments, pp 365-383. Springer.

Benson EE, Harding K, Johnston J & Day JG (2005) From ecosystems to cryobanks: the role of cryo-conservation in the preservation and sustainable utilisation of global phyto-diversity.  In: Contributing to a sustainable future: proceedings of the Australian branch of the iaptc&b, pp 30-44. Bennett IJ, Bunn E, Clarke H & McComb JA (Eds) Iaptc&b, Perth, Western Australia.

Coleman AW & Pröschold T (2005) Control of sexual reproduction in algae in culture. In: Algal Culturing Techniques, pp 389-397. Andersen RA (Ed) Academic Press, New York.

Day JG (2007) Cryopreservation of Microalgae and Cyanobacteria. In: Cryopreservation and Freeze-drying Protocols, pp 141-152. Day JG & Stacey GN (Eds) Humana Press.

Day JG, Achilles-Day UEM, Brown S & Warren A (2007) Cultivation of algae and protozoa. In: Manual of Environmental Microbiology, pp 77-92. ASM Press, Washington DC.

Day JG & Stacey GN (Eds) (2007) Cryopreservation and Freeze-drying Protocols. Humana Press.

Day JG, Harding K, Nadarajan J & Benson EE (in press) Cryopreservation: Conservation of bioresources at ultra-low temperatures. In: Molecular Biomethods Handbook 2nd Edition. Walker JM & Rapley R (Eds) Humana Press.

Day JG (2005) Cryopreservation and the problem of freeze-recalcitrance, in algal culture collections. In: Culture collections and environmental research, pp 73-86. Kasai F, Kaya K & Watanabe MM (Eds) Tokai University Press, Tokyo.

Day JG & Brand JJ (2005) Cryopreservation Methods for Maintaining Cultures. In: Algal Culturing Techniques, pp165-187. Andersen RA (Ed) Academic Press, New York.

Küpper H, Küpper FC & Spiller M (in press) Chlorophyll degradation products formed during metal stress in vivo and during chlorophyll breakdown in dead organic matter and solutions. In: Biochemistry and Biophysics of Chlorophylls. Grimm B, Porra R, Rüdiger W, Scheer H (eds.). Series Advances in Photosynthesis (Series Ed: Govindjee), Kluwer.

Lorenz M, Friedl T & Day JG (2005) Perpetual Maintenance of Actively Metabolizing Microalgal Cultures. In: Algal Culturing Techniques, pp 145-155. Andersen RA (Ed) Academic Press, New York.

Pröschold T & Leliaert F (2007) Systematics of the green algae: Conflict of classic and modern approaches. In: Unravelling the Algae: The Past, Present and Future of the Algae Systematics, pp 5. Brodie J & Lewis J (Eds) Taylor and Francis.

Stacey GN & Day JG (2007) Long-term ex situ conservation of Biological Resources and the role of Biological Resource Centres. In: Cryopreservation and Freeze-drying Protocols, pp 1-14. Day JG & Stacey GN (Eds) Humana Press.

Strittmatter M, Gachon CMM & Küpper FC (2008) Ecology of lower oomycetes. In: Oomycete Genetics and Genomics: Diversity, Plant and Animal Interactions, and Toolbox, pp 25-46. Lamour K & Kamoun S (Eds) John Wiley & Sons.

CONTRACT RESEARCH REPORTS

Day JG (2005) The COnservation of a vital european scientific and Biotechnological Resource: microAlgae and cyanobacteria (COBRA): Report on months 37-42 (Addendum to Final Report). 58pp, EU Contract No. QLRI-CT--2001-01645.

Day JG et al. (2005) The COnservation of a vital european scientific and Biotechnological Resource: microAlgae and cyanobacteria (COBRA): Year 3 & Final Report. 148pp, EU Contract No. QLRI-CT--2001-01645.

PAPERS PRESENTED AT SCIENTIFIC MEETINGS

BPS Meeting: Bristol Jan, 2008

Gachon CMM, Müller DG, Strittmatter M & Küpper FC. Is innate immunity conserved among brown algae? (O)

Day JG, Campbell CN, Gachon CMM, Pröschold T, Saxon RJ & Küpper FC. Bioinformatics, genomics and the Culture Collection of Algae and Protozoa. (P)

11th International Conference on Culture Collections: Goslar, Germany, October 2007

Campbell CN, Achilles-Day UEM, Day JG, Gaj G, Saxon RJ, Pröschold T & Küpper FC. The Culture Collection of Algae and Protozoa: A unique source for microbial diversity. (P)

Campbell CN, Gachon CMM, Day JG, Pröschold T, Saxon RJ & Küpper FC. Bioinformatics, genomics and the Culture Collection of Algae and Protozoa.

BPS Meeting: Plymouth Jan, 2006

Day JG, Müller J, Lorenz M, Benson EE & Friedl T. Inter-laboratory post-cryopreservation stability testing.  (P)

Unravelling the algae - the past, present and future of algal molecular systematics: London, April 2006

Day JG, Müller J, Comte K, Friedl T, Rippka R, Lorenz M, Pröschold T, Harding K & Benson EE. Phenotypic and genotypic stability of algal and cyanobacterial cultures: a prerequisite for taxonomic and systematic studies. (P)

Müller J, Friedl T, Lorenz M, Day JG & Harding K. Applications of genetic fingerprints in cultures of microalgae. (P)

Workshop and training course on microalgal culture collections: Izmir, May 2006

Day JG. An overview on algal biotechnology and culture collections.

Day JG. The EU funded COBRA project: The COnservation of a vital european scientific and Biotechnological Resource: microAlgae and cyanobacteria.

Day JG. Cryopreservation principles and constraints as applied to algal cultures.

Cryo 2006: Hamburg, July 2006

Harding K, Benson EE, Müller J, Timmermann H, Lorenz M, Friedl T & Day JG. Cryopreservation of storage recalcitrant algae through fundamental studies of thermal behaviour and oxidative stress physiology. (P)

Harding K, Müller J, Timmermann H, Lorenz M, Friedl T & Day JG. Growth and Amplified Fragment Length Polymorphism analysis of Euglena gracilis after cryopreservation by alginate encapsulation dehydration. (P)

EDITOR

Cox EJ & Day JG (2007) European Journal of Phycology 42(1)

Cox EJ & Day JG (2007) European Journal of Phycology 42(2)

Cox EJ & Day JG (2007) European Journal of Phycology 42(3)

Cox EJ & Day JG (2007) European Journal of Phycology 42(4)

Day JG & Stacey GN (Eds) (2007) Cryopreservation and Freeze-drying protocls.  Methods in Molecular Biology. Humana Press Inc. Totowa, NJ. 348pp

NEWSLETTER ARTICLES, REPORTS ETC.

Day JG & Saxon RJ (2005) Algal culture collections in Europe: The need to use cryopreservation. SLTB Newsletter, December 2005: 5-6.

Williamson P & Day JG (2007) The problem with protists: is barcoding the answer? The Biologist 54, 86-90.

Williamson P, Andersen R & Küpper FC (2007) Why every protist needs a barcode. Microbiology Today 34, 46-47.

OTHER OUTPUT

Hosted 3 work experience school students

Involvement in several outreach events; school visits, environmental events etc.